Pantry Portal

This portal contains the results of multimodal RNA phenotyping and genetic analyses for 50 human tissue datasets using Pantry. It includes RNA phenotypes, covariates, cis-xQTL results from tensorQTL, and weights and associations for multimodal transcriptome-wide association study (xTWAS) results using FUSION, for six RNA modalities, for Geuvadis and 49 GTEx tissues. The xTWAS data covers 114 traits using GWAS data from this collection.

📄 Publication

"Multimodal analysis of RNA sequencing data powers discovery of complex trait genetics" Nature Communications 2024

Read the Paper
💻 Source Code

Pantry pipeline code for RNA phenotyping and genetic analyses

View on GitHub
📊 Dataset

Permanent data repository with DOI on Zenodo. Contains compressed archives of the downloadable files in this portal.

Access the Data

Browse the xTWAS hits and xQTLs for 49 human tissues from GTEx, or download the data, including RNA phenotypes, covariates, xQTLs, xTWAS weights, and xTWAS hits.